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CryoEM Archiving and Validation Recommendations
A workshop was held at ÀÖÌìÌÃÓÎÏ·ÍøÕ¾ in January 2020 to discuss data requirements for deposition and validation of cryoEM structures, with a focus on single-particle analysis and setting community recommendations. |
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Latest Developments on the EMDB Published
We are please to announce the publication of this manuscript, addressing the recent developments in the archiving of 3DEM data and the future plans for the EMDB. |
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Poster Prize Awarded at The Biophysical Society Meeting
The wwPDB Foundation made an award for outstanding student presentations at the 2024 Biophysical Society Meeting (February 10-14, Philadelphia, PA) to Irin Pottanani Tom for her poster entitled "Mechanisms of Light Sig |
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wwPDB Biocurator Milestone: >10,000 Depositions Processed
Congratulations to biocurator Minyu Chen on processing over 10,000 PDB depositions. |
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wwPDB Preprint Published on NMR Restraint Validation
This manuscript addresses this challenge of validation of experimental biomolecular NMR structures against restraint data. The NMR exchange (NEF) and NMR-STAR formats provide a standardized approach for representing commonly used NMR restraints. |
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wwPDB Preprint Published on CryoEM Archiving and Validation Recommendations
A workshop was held at ÀÖÌìÌÃÓÎÏ·ÍøÕ¾ (Hinxton, UK) in January 2020 to discuss data requirements for deposition and validation of cryoEM structures, with a focus on single-particle analysis and set community recommendations. |
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Improved access to ligand data and annotations in the PDBe FTP
PDBe has overhauled its ligand FTP data structure, providing streamlined access to protein-ligand interactions and annotations data. |
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wwPDB Preprint Published on NextGen Archive
A new paper describes how the recently-announced NextGen Archive provides centralized access to integrated annotations and enriched structural information for PDB data: |
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Resources for Supporting the Extended PDB ID Format (pdb_00001abc)
wwPDB anticipates that all the four character PDB accession codes (PDB ID) will be consumed by 2029. |
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wwPDB - Time-stamped Copies of PDB and EMDB Archives
A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org, https://s3.rcsb.org) as of January 2, 2024 has been added to ftp://snapshots.wwpdb.org, |
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wwPDB - Improved Depositor Experience Using ORCiD
Since March 2023, depositors can use their ORCiDs to access the OneDep system. This authentication method enables contact authors to access sessions without sharing passwords. |
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wwPDB News - PDB Entries with Novel Ligands Now Distributed Only in PDBx/mmCIF and PDBML File Formats
The PDB three-character Chemical Component IDs are consumed and PDB has begun issuing five-character alphanumeric accession codes for CCD IDs in the OneDep system. To avoid confusion with current four-character PDB IDs, four-character codes are not used. |