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Crystal structure of eugenol oxidase in complex with vanillin

Source organism: Rhodococcus jostii RHA1
Biochemical function: FAD binding
Biological process: lactate catabolic process
Cellular component: not assigned

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EC 1.1.3.38: Vanillyl-alcohol oxidase

Reaction catalysed:
Vanillyl alcohol + O(2) = vanillin + H(2)O(2)
Systematic name:
Vanillyl alcohol:oxygen oxidoreductase
Alternative Name(s):
  • 4-hydroxy-2-methoxybenzyl alcohol oxidase

GO terms

Sequence families

Pfam Protein families (Pfam)
PF02913
Domain description: FAD linked oxidases, C-terminal domain
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
The deposited structure of PDB entry 5fxp contains 2 copies of Pfam domain PF02913 (FAD linked oxidases, C-terminal domain) in FAD-binding PCMH-type domain-containing protein. Showing 1 copy in chain A.

PF01565
Domain description: FAD binding domain
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
The deposited structure of PDB entry 5fxp contains 2 copies of Pfam domain PF01565 (FAD binding domain ) in FAD-binding PCMH-type domain-containing protein. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR016171
Domain description: Vanillyl-alcohol oxidase, C-terminal subdomain 2
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
IPR004113
Domain description: FAD-binding oxidoreductase/transferase, type 4, C-terminal
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
IPR016164
Domain description: FAD-linked oxidase-like, C-terminal
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
IPR016170
Domain description: Cytokinin dehydrogenase, C-terminal domain superfamily
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
IPR016169
Domain description: FAD-binding, type PCMH, subdomain 2
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
IPR006094
Domain description: FAD linked oxidase, N-terminal
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
IPR016166
Domain description: FAD-binding domain, PCMH-type
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
IPR036318
Domain description: FAD-binding, type PCMH-like superfamily
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
IPR016167
Domain description: FAD-binding, type PCMH, subdomain 1
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein

Structure domains

CATH CATH domains
1.10.45.10
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Vanillyl-alcohol Oxidase; Chain A, domain 4
Homology: Vanillyl-alcohol Oxidase; Chain A, domain 4
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
The deposited structure of PDB entry 5fxp contains 2 copies of CATH domain 1.10.45.10 (Vanillyl-alcohol Oxidase; Chain A, domain 4) in FAD-binding PCMH-type domain-containing protein. Showing 1 copy in chain A.
3.40.462.10
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: Vanillyl-alcohol Oxidase; Chain A, domain 3
Homology: FAD-linked oxidases, C-terminal domain
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
The deposited structure of PDB entry 5fxp contains 2 copies of CATH domain 3.40.462.10 (Vanillyl-alcohol Oxidase; Chain A, domain 3) in FAD-binding PCMH-type domain-containing protein. Showing 1 copy in chain A.
3.30.465.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
Homology: Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
The deposited structure of PDB entry 5fxp contains 2 copies of CATH domain 3.30.465.10 (Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3) in FAD-binding PCMH-type domain-containing protein. Showing 1 copy in chain A.
3.30.43.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2
Homology: Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
Occurring in:
  1. FAD-binding PCMH-type domain-containing protein
The deposited structure of PDB entry 5fxp contains 2 copies of CATH domain 3.30.43.10 (Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2) in FAD-binding PCMH-type domain-containing protein. Showing 1 copy in chain A.

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