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PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS

Source organism: Sesbania mosaic virus
Biochemical function: metal ion binding
Biological process: not assigned
Cellular component: virion component

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GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Sequence family

Pfam Protein family (Pfam)
PF00729
Domain description: Viral coat protein (S domain)
Occurring in:
  1. Capsid protein
The deposited structure of PDB entry 1smv contains 3 copies of Pfam domain PF00729 (Viral coat protein (S domain)) in Capsid protein. Showing 1 copy in chain C.

InterPro InterPro annotations
IPR000937
Domain description: Icosahedral viral capsid protein, S domain
Occurring in:
  1. Capsid protein
IPR029053
Domain description: Viral coat protein subunit
Occurring in:
  1. Capsid protein

Structure domain

CATH CATH domain
2.60.120.20
Class: Mainly Beta
Architecture: Sandwich
Topology: Jelly Rolls
Homology: Jelly Rolls
Occurring in:
  1. Capsid protein
The deposited structure of PDB entry 1smv contains 3 copies of CATH domain 2.60.120.20 (Jelly Rolls) in Capsid protein. Showing 1 copy in chain C.
SCOP SCOP annotation
88643
Class: All beta proteins
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: Positive stranded ssRNA viruses
Occurring in:
  1. Capsid protein
The deposited structure of PDB entry 1smv contains 3 copies of SCOP domain 88643 (Tombusviridae-like VP) in Capsid protein. Showing 1 copy in chain C.

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